custom_treespace.RdThis function will take list of rwty.chains objects and produce a matrix of ordinations in treespace based on Robinson-Foulds Distance. The points can be colored and sized by extra columns listed in the `ext_columns` argument. This function is from Dan Warren and Rob Lanfear's `RWTY` package.
custom_treespace(chains, n.points = 100, burnin = 0, fill.color = NA, ext_columns = NULL)
| chains | A list of one or more rwty.chain objects |
|---|---|
| n.points | The number of points on each plot |
| burnin | The number of samples to remove from the start of the chain as burnin |
| fill.color | The name of any column in your parameter file that you would like to use as a fill colour for the points of the plot. |
| ext_columns | Any extra columns you'd like to color your plot by |
A matrix of ordinations in treespace.